Publications

2015

April - June

Goll Y, Atlan G, Citri A.

Attention: the claustrum.

Trends Neurosci.  2015 pubmed

Rybak-Wolf A, Stottmeister C, Glazar P, Jens M, Pino N, Giusti S, Hanan M, Behm M, Bartok O, Ashwal-Fluss R, Herzog M, Schreyer L, Papavasileiou P, Ivanov A, Öhman M, Refojo D, Kadener S, Rajewsky N.

Circular RNAs in the Mammalian Brain Are Highly Abundant, Conserved, and Dynamically Expressed.

Mol Cell.  2015 pubmed

Hsieh TH, Weiner A, Lajoie B, Dekker J, Friedman N, Rando OJ.

Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C.

Cell.  2015 pubmed

Lerner I, Bartok O, Wolfson V, Menet JS, Weissbein U, Afik S, Haimovich D, Gafni C, Friedman N, Rosbash M, Kadener S.

Clk post-transcriptional control denoises circadian transcription both temporally and spatially.

Nat Commun.  2015 pubmed

Israel LL, Lellouche E, Ostrovsky S, Yarmiayev V, Bechor M, Michaeli S, Lellouche JP.

Acute in Vivo Toxicity Mitigation of PEI-Coated Maghemite Nanoparticles Using Controlled Oxidation and Surface Modifications toward siRNA Delivery.

ACS Appl Mater Interfaces.  2015 pubmed

Sajman J, Zenvirth D, Nitzan M, Margalit H, Simpson-Lavy KJ, Reiss Y, Cohen I, Ravid T, Brandeis M.

Degradation of Ndd1 by APC/C(Cdh1) generates a feed forward loop that times mitotic protein accumulation.

Nat Commun.  2015 pubmed

Gorfine M, Goldstein B, Fishman A, Heller R, Heller Y, Lamm AT.

Function of cancer associated genes revealed by modern univariate and multivariate association tests.

PLoS One.  2015 pubmed

Eliaz D, Doniger T, Tkacz ID, Gupta SK, Kolev NG, Unger R, Ullu E, Tschudi C, Michaeli S.

Genome-wide analysis of small nucleolar RNAs of Leishmania major reveals a rich repertoire of RNAs involved in modification and processing of rRNA.

RNA Biol.  2015 pubmed

Michaeli S.

The response of trypanosomes and other eukaryotes to ER stress and the spliced leader RNA silencing (SLS) pathway in Trypanosoma brucei.

Crit Rev Biochem Mol Biol.  2015 pubmed

Kapilov-Buchman Y, Lellouche E, Michaeli S, Lellouche JP.

Unique Surface Modification of Silica Nanoparticles with Polyethylenimine (PEI) for siRNA Delivery Using Cerium Cation Coordination Chemistry.

Bioconjug Chem.  2015 pubmed

Nitzan M, Shimoni Y, Rosolio O, Margalit H, Biham O.

Stochastic analysis of bistability in coherent mixed feedback loops combining transcriptional and posttranscriptional regulations.

Phys Rev E Stat Nonlin Soft Matter Phys.  2015 pubmed

Stelzer Y, Bar S, Bartok O, Afik S, Ronen D, Kadener S, Benvenisty N.

Differentiation of human parthenogenetic pluripotent stem cells reveals multiple tissue- and isoform-specific imprinted transcripts.

Cell Rep.  2015 pubmed

Shakiba N, White CA, Lipsitz YY, Yachie-Kinoshita A, Tonge PD, Hussein SM, Puri MC, Elbaz J, Morrissey-Scoot J, Li M, Munoz J, Benevento M, Rogers IM, Hanna JH, Heck AJ, Wollscheid B, Nagy A, Zandstra PW.

CD24 tracks divergent pluripotent states in mouse and human cells.

Nat Commun.  2015

Levy A, Goren MG, Yosef I, Auster O, Manor M, Amitai G, Edgar R, Qimron U, Sorek R.

CRISPR adaptation biases explain preference for acquisition of foreign DNA.

Nature.  2015 pubmed

Levi I, Amsalem H, Nissan A, Darash-Yahana M, Peretz T, Mandelboim O, Rachmilewitz J.

Characterization of tumor infiltrating natural killer cell subset.

Oncotarget.  2015 pubmed

Danan-Gotthold M, Golan-Gerstl R, Eisenberg E, Meir K, Karni R, Levanon EY.

Identification of recurrent regulated alternative splicing events across human solid tumors.

Nucleic Acids Res.  2015 pubmed

Maza I, Caspi I, Zviran A, Chomsky E, Rais Y, Viukov S, Geula S, Buenrostro JD, Weinberger L, Krupalnik V, Hanna S, Zerbib M, Dutton JR, Greenleaf WJ, Massarwa R, Novershtern N, Hanna JH.

Transient acquisition of pluripotency during somatic cell transdifferentiation with iPSC reprogramming factors.

Nat Biotechnol.  2015 pubmed

Bartok O, Teesalu M, Ashwall-Fluss R, Pandey V, Hanan M, Rovenko BM, Poukkula M, Havula E, Moussaieff A, Vodala S, Nahmias Y, Kadener S, Hietakangas V.

The transcription factor Cabut coordinates energy metabolism and the circadian clock in response to sugar sensing.

EMBO J.  2015 pubmed

January - March

Alon S, Garrett SC, Levanon EY, Olson S, Graveley BR, Rosenthal JJ, Eisenberg E.

The majority of transcripts in the squid nervous system are extensively recoded by A-to-I RNA editing.

Elife.  2015 pubmed

Edri R, Yaffe Y, Ziller MJ, Mutukula N, Volkman R, David E, Jacob-Hirsch J, Malcov H, Levy C, Rechavi G, Gat-Viks I, Meissner A, Elkabetz Y.

Analysing human neural stem cell ontogeny by consecutive isolation of Notch active neural progenitors.

Nat Commun.  2015

Nitzan M, Fechter P, Peer A, Altuvia Y, Bronesky D, Vandenesch F, Romby P, Biham O, Margalit H.

A defense-offense multi-layered regulatory switch in a pathogenic bacterium.

Nucleic Acids Res.  2015 pubmed

Weiner A, Hsieh TH, Appleboim A, Chen HV, Rahat A, Amit I, Rando OJ, Friedman N.

High-resolution chromatin dynamics during a yeast stress response.

Mol Cell.  2015 pubmed

Pandey D, Hori D, Kim JH, Bergman Y, Berkowitz DE, Romer LH.

NEDDylation promotes endothelial dysfunction: a role for HDAC2.

J Mol Cell Cardiol.  2015 pubmed

Abu-Remaileh M, Bender S, Raddatz G, Ansari I, Cohen D, Gutekunst J, Musch T, Linhart H, Breiling A, Pikarsky E, Bergman Y, Lyko F.

Chronic inflammation induces a novel epigenetic program that is conserved in intestinal adenomas and in colorectal cancer.

Cancer Res.  2015 pubmed

Gur C, Ibrahim Y, Isaacson B, Yamin R, Abed J, Gamliel M, Enk J, Bar-On Y, Stanietsky-Kaynan N, Coppenhagen-Glazer S, Shussman N, Almogy G, Cuapio A, Hofer E, Mevorach D, Tabib A, Ortenberg R, Markel G, Miklić K, Jonjic S, Brennan CA, Garrett WS, Bachrach G, Mandelboim O

Binding of the Fap2 protein of Fusobacterium nucleatum to human inhibitory receptor TIGIT protects tumors from immune cell attack.

Immunity.  2015 pubmed

Stern-Ginossar N.

Decoding viral infection by ribosome profiling.

J Virol.  2015 pubmed

Seidel E, Le VT, Bar-On Y, Tsukerman P, Enk J, Yamin R, Stein N, Schmiedel D, Oiknine Djian E, Weisblum Y, Tirosh B, Stastny P, Wolf DG, Hengel H, Mandelboim O.

Dynamic Co-evolution of Host and Pathogen: HCMV Downregulates the Prevalent Allele MICA‚àó008 to Escape Elimination by NK Cells.

Cell Rep.  2015 pubmed

Falick Michaeli T, Bergman Y, Gielchinsky Y.

Rejuvenating effect of pregnancy on the mother.

Fertil Steril.  2015 pubmed

Yossef R, Gur C, Shemesh A, Guttman O, Hadad U, Nedvetzki S, Miletić A, Nalbandyan K, Cerwenka A, Jonjic S, Mandelboim O, Porgador A. Targeting natural killer cell reactivity by employing antibody to NKp46: implications for type 1 diabetes.

PLoS One.  2015 pubmed

Rappoport N, Simon AJ, Lev A, Yacobi M, Kaplinsky C, Weingarten M, Somech R, Amariglio N, Rechavi G.

Correlation between 'ACKR1/DARC null' polymorphism and benign neutropenia in Yemenite Jews.

Br J Haematol.  2015 pubmed

Knisbacher BA, Levanon EY.

DNA and RNA editing of retrotransposons accelerate mammalian genome evolution.

Ann N Y Acad Sci.  2015 pubmed

Bahar Halpern K, Tanami S, Landen S, Chapal M, Szlak L, Hutzler A, Nizhberg A, Itzkovitz S.

Bursty gene expression in the intact mammalian liver.

Mol Cell.  2015 pubmed

Wensveen FM, Jelencic V, Valentic S, Sestan M, Wensveen TT, Theurich S, Glasner A, Mendrila D, Stimac D, Wunderlich FT, Bruning JC, Mandelboim O, Polic B.

NK cells link obesity-induced adipose stress to inflammation and insulin resistance.

Nat Immunol.  2015 pubmed

Ivanov A, Memczak S, Wyler E, Torti F, Porath HT, Orejuela MR, Piechotta M, Levanon EY, Landthaler M, Dieterich C, Rajewsky N.

Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals.

Cell Rep.  2015 pubmed

Vietri Rudan M, Barrington C, Henderson S, Ernst C, Odom DT, Tanay A, Hadjur S.

Comparative Hi-C reveals that CTCF underlies evolution of chromosomal domain architecture.

Cell Rep.  2015 pubmed

Geula S, Moshitch-Moshkovitz S, Dominissini D, Mansour AA, Kol N, Salmon-Divon M, Hershkovitz V, Peer E, Mor N, Manor YS, Ben-Haim MS, Eyal E, Yunger S, Pinto Y, Jaitin DA, Viukov S, Rais Y, Krupalnik V, Chomsky E, Zerbib M, Maza I, Rechavi Y, Massarwa R, Hanna S, Amit I, Levanon EY, Amariglio N, Stern-Ginossar N, Novershtern N, Rechavi G, Hanna JH

Stem cells. m6A mRNA methylation facilitates resolution of naïve pluripotency toward differentiation.

Science.  2015 pubmed

Falick Michaeli T, Laufer N, Sagiv JY, Dreazen A, Granot Z, Pikarsky E, Bergman Y, Gielchinsky Y.

The rejuvenating effect of pregnancy on muscle regeneration.

Aging Cell.  2015 pubmed

July - September

Shinar Y, Tohami T, Livneh A, Schiby G, Hirshberg A, Nagar M, Goldstein I, Cohen R, Kukuy O, Shubman O, Sharabi Y, Gonzalez-Roca E, Arostegui JI, Rechavi G, Amariglio N, Salomon O.

Acquired familial Mediterranean fever associated with a somatic MEFV mutation in a patient with JAK2 associated post-polycythemia myelofibrosis.

Orphanet J Rare Dis.  2015 pubmed

Tattikota SG, Rathjen T, Hausser J, Khedkar A, Kabra UD, Pandey VK, Sury M, Wessels HH, Mollet IG, Eliasson L, Selbach M, Zinzen RP, Zavolan M, Kadener S, Tschöp M, Jastroch M, Friedlander MR, Poy MN.

MiR-184 regulates pancreatic β-cell function according to glucose metabolism.

J Biol Chem.  2015 pubmed

Korem T, Zeevi D, Suez J, Weinberger A, Avnit-Sagi T, Pompan-Lotan M, Matot E, Jona G, Harmelin A, Cohen N, Sirota-Madi A, Thaiss CA, Pevsner-Fischer M, Sorek R, Xavier R, Elinav E, Segal E.

Growth dynamics of gut microbiota in health and disease inferred from single metagenomic samples.

Science.  2015

2014

October - December

Goldfarb T, Sberro H, Weinstock E, Cohen O, Doron S, Charpak-Amikam Y, Afik S, Ofir G, Sorek R.

BREX is a novel phage resistance system widespread in microbial genomes.

EMBO J. Dec 2014 pubmed

Ben-Haim MS, Moshitch-Moshkovitz S, Rechavi G.

FTO: linking m(6)A demethylation to adipogenesis.

Cell Res. Dec 2015 pubmed

Rabani M, Raychowdhury R, Jovanovic M, Rooney M, Stumpo DJ, Pauli A, Hacohen N, Schier AF, Blackshear PJ, Friedman N, Amit I, Regev A.

High-resolution sequencing and modeling identifies distinct dynamic RNA regulatory strategies.

Cell. Dec 2014 pubmed

Shaham L, Vendramini E, Ge Y, Goren Y, Birger Y, Tijssen MR, McNulty M, Geron I, Schwartzman O, Goldberg L, Chou ST, Pitman H, Weiss MJ, Michaeli S, Sredni B, Gottgens B, Crispino JD, Taub JW, Izraeli S.

MicroRNA-486-5p is an erythroid oncomiR of the myeloid leukemias of Down syndrome.

Blood. Dec 2014 pubmed

Levin-Klein R, Bergman Y.

Epigenetic regulation of monoallelic rearrangement (allelic exclusion) of antigen receptor genes.

Front Immunol.  2014 pubmed

Irie N, Weinberger L, Tang WW, Kobayashi T, Viukov S, Manor YS, Dietmann S, Hanna JH, Surani MA.

SOX17 Is a Critical Specifier of Human Primordial Germ Cell Fate.

Cell. Dec 2014 pubmed

Brusilovsky M, Radinsky O, Cohen L, Yossef R, Shemesh A, Braiman A, Mandelboim O, Campbell KS, Porgador A.

Regulation of natural cytotoxicity receptors by heparan sulfate proteoglycans in -cis: A lesson from NKp44.

Eur J Immunol. Dec 2014 pubmed

Tsukerman P, Yamin R, Seidel E, Khawaled S, Schmiedel D, Bar-Mag T, Mandelboim O.

MiR-520d-5p directly targets TWIST1 and downregulates the metastamiR miR-10b.

Oncotarget. Nov 2014 pubmed

Levanon EY, Eisenberg E.

Does RNA editing compensate for Alu invasion of the primate genome?

Bioessays. Nov 2014  pubmed

 

Shimanovich U, Lipovsky A, Eliaz D, Zigdon S, Knowles TP, Nitzan Y, Michaeli S, Gedanken A.

Tetracycline Nanoparticles as Antibacterial and Gene-Silencing Agents.

Adv Healthc Mater.  Nov 2014 pubmed

Schuettengruber B, Oded Elkayam N, Sexton T, Entrevan M, Stern S, Thomas A, Yaffe E, Parrinello H, Tanay A, Cavalli G.

Cooperativity, specificity, and evolutionary stability of Polycomb targeting in Drosophila.

Cell Rep. Oct 2014 pubmed

Li XY, Harrison MM, Villalta JE, Kaplan T, Eisen MB.

Establishment of regions of genomic activity during the Drosophila maternal to zygotic transition.

Elife.  Oct 2014 pubmed

Goldberger T, Mandelboim O.

Editorial introduction for Seminars in Immunopathology special issue on immune modulation

Semin Immunopathol.  Oct 2014 pubmed

July - September

Gal M, Levanon EY, Hujeirat Y, Khayat M, Pe'er J, Shalev S. Novel mutation in TSPAN12 leads to autosomal recessive inheritance of congenital vitreoretinal disease with intra-familial phenotypic variability. Am J Med Genet A.  Sep 2014 pubmed

Ashwal-Fluss R, Meyer M, Pamudurti NR, Ivanov A, Bartok O, Hanan M, Evantal N, Memczak S, Rajewsky N, Kadener S. circRNA Biogenesis Competes with Pre-mRNA Splicing. Mol Cell.  Sep 2014 pubmed

Goldberger T, Mandelboim O. The use of microRNA by human viruses: lessons from NK cells and HCMV infection. Semin Immunopathol.  Sep 2014 pubmed

Goldberger T, Mandelboim O.

The use of microRNA by human viruses: lessons from NK cells and HCMV infection.

Semin Immunopathol.  Sep 2014  pubmed

Turm H, Mukherjee D, Haritan D, Tahor M, Citri A. Comprehensive analysis of transcription dynamics from brain samples following behavioral experience. J Vis Exp.  Sep 2014 pubmed

Ashwal-Fluss R, Meyer M, Pamudurti NR, Ivanov A, Bartok O, Hanan M, Evantal N, Memczak S, Rajewsky N, Kadener S.

circRNA biogenesis competes with pre-mRNA splicing.

Mol Cell.  Sep 2014 pubmed

Cohen Y, Stern-Ginossar N. Manipulation of host pathways by human cytomegalovirus: insights from genome-wide studies. Semin Immunopathol.  Sep 2014 pubmed

Gal M, Levanon EY, Hujeirat Y, Khayat M, Pe'er J, Shalev S.

Novel mutation in TSPAN12 leads to autosomal recessive inheritance of congenital vitreoretinal disease with intra-familial phenotypic variability.

Am J Med Genet A. Sep 2014 pubmed

Barberan-Soler S, Fontrodona L, Ribo A, Lamm AT, Iannone C, Ceron J, Lehner B, Valcarcel J. Co-option of the piRNA Pathway for Germline-Specific Alternative Splicing of C.elegans TOR. Cell Rep.  Sep 2014 pubmed

Ravid-Hermesh O, Zurgil N, Shafran Y, Sobolev M, Galmidi M, Badihi Y, Israel LL, Lellouche JP, Lellouche E, Michaeli S, Deutsch M. Real-time quantification of protein expression and translocation at individual cell resolution using imaging-dish-based live cell array.

Anal Bioanal Chem. Sep 2014 pubmed

Cohen Y, Stern-Ginossar N.

Manipulation of host pathways by human cytomegalovirus: insights from genome-wide studies.

Semin Immunopathol. 2014 Sep 27

Ravid-Hermesh O, Zurgil N, Shafran Y, Sobolev M, Galmidi M, Badihi Y, Israel LL, Lellouche JP, Lellouche E, Michaeli S, Deutsch M. 
Real-time quantification of protein expression and translocation at individual cell resolution using imaging-dish-based live cell array. Anal Bioanal Chem.  Sep 2014 pubmed

 

Huja S, Oren Y, Biran D, Meyer S, Dobrindt U, Bernhard J, Becher D, Hecker M, Sorek R, Ron EZ. Fur is the master regulator of the extraintestinal pathogenic Escherichia coli response to serum. MBio.  Aug 2014 pubmed

Lara-Astiaso D, Weiner A, Lorenzo-Vivas E, Zaretsky I, Jaitin DA, David E, Keren-Shaul H, Mildner A, Winter D, Jung S, Friedman N, Amit I. Immunogenetics. Chromatin state dynamics during blood formation. Science.  Aug 2014 pubmed

Mick E, Sorek R. High-resolution metagenomics. Nat Biotechnol.  Aug 2014 pubmed

Ingolia NT, Brar GA, Stern-Ginossar N, Harris MS, Talhouarne GJ, Jackson SE, Wills MR, Weissman JS. Ribosome profiling reveals pervasive translation outside of annotated protein-coding genes. Cell Rep.  Aug 2014 pubmed

Porath HT, Carmi S, Levanon EY. A genome-wide map of hyper-edited RNA reveals numerous new sites. Nat Commun.  Aug 2014 pubmed

Maza I, Hanna JH. Hijacked by an oocyte: hierarchical molecular changes in somatic cell nuclear transfer. Mol Cell.  Aug 2014 pubmed

Mellin JR, Koutero M, Dar D, Nahori MA, Sorek R, Cossart P. Riboswitches. Sequestration of a two-component response regulator by a riboswitch-regulated noncoding RNA. Science.  Aug 2014 pubmed

Solomon O, Bazak L, Levanon EY, Amariglio N, Unger R, Rechavi G, Eyal E. Characterizing of functional human coding RNA editing from evolutionary, structural, and dynamic perspectives. Proteins.  Aug 2014 pubmed

Brocks D, Assenov Y, Minner S, Bogatyrova O, Simon R, Koop C, Oakes C, Zucknick M, Lipka DB, Weischenfeldt J, Feuerbach L, Cowper-Sal Lari R, Lupien M, Brors B, Korbel J, Schlomm T, Tanay A, Sauter G, Gerhauser C, Plass C; ICGC Early Onset Prostate Cancer Project. Intratumor DNA methylation heterogeneity reflects clonal evolution in aggressive prostate cancer. Cell Rep.  Jul 2014 pubmed

Michaeli S. Non-coding RNA and the complex regulation of the trypanosome life cycle. Curr Opin Microbiol.  Jul 2014 pubmed

Shipony Z, Mukamel Z, Cohen NM, Landan G, Chomsky E, Zeliger SR, Fried YC, Ainbinder E, Friedman N, Tanay A. Dynamic and static maintenance of epigenetic memory in pluripotent and somatic cells. Nature.  Jul 2014 pubmed

Krupalnik V, Hanna JH. Stem cells: The quest for the perfect reprogrammed cell. Nature.  Jul 2014 pubmed

Zviran A, Hanna JH. Lucky iPSCs. Genome Biol.  Jul 2014 pubmed

April - June

Jacoby E, Yalon M, Leitner M, Cohen ZR, Cohen Y, Fisher T, Eder S, Amariglio N, Rechavi G, Cazacu S, Xiang C, Mikkelsen T, Brodie C, Toren A. Related to testes-specific, vespid and pathogenesis protein-1 is regulated by methylation in glioblastoma. Oncol Lett.  Jun 2014 pubmed

Nachmani D, Gutschner T, Reches A, Diederichs S, Mandelboim O. RNA-binding proteins regulate the expression of the immune activating ligand MICB. Nat Commun.  Jun 2014 pubmed

Gupta SK, Chikne V, Eliaz D, Tkacz ID, Naboishchikov I, Carmi S, Waldman Ben-Asher H, Michaeli S. Two splicing factors carrying serine-arginine motifs, TSR1 and TSR1IP, regulate splicing, mRNA stability, and rRNA processing in Trypanosoma brucei. RNA Biol.  Jun 2014 pubmed

Shalek AK, Satija R, Shuga J, Trombetta JJ, Gennert D, Lu D, Chen P, Gertner RS, Gaublomme JT, Yosef N, Schwartz S, Fowler B, Weaver S, Wang J, Wang X, Ding R, Raychowdhury R, Friedman N, Hacohen N, Park H, May AP, Regev A. Single-cell RNA-seq reveals dynamic paracrine control of cellular variation. Nature.  Jun 2014 pubmed

Levin-Klein R, Kirillov A, Rosenbluh C, Cedar H, Bergman Y. A novel pax5-binding regulatory element in the igk locus. Front Immunol.  Jun 2014 pubmed

Pandey D, Bhunia A, Oh YJ, Chang F, Bergman Y, Kim JH, Serbo J, Boronina TN, Cole RN, Van Eyk J, Remaley AT, Berkowitz DE, Romer LH. OxLDL triggers retrograde translocation of arginase2 in aortic endothelial cells via ROCK and mitochondrial processing peptidase. Circ Res.  Jun 2014 pubmed

Fang X, Nevo E, Han L, Levanon EY, Zhao J, Avivi A, Larkin D, Jiang X, Feranchuk S, Zhu Y, Fishman A, Feng Y, Sher N, Xiong Z, Hankeln T, Huang Z, Gorbunova V, Zhang L, Zhao W, Wildman DE, Xiong Y, Gudkov A, et al. Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax. Nat Commun.  Jun 2014 pubmed

Ghadially H, Ohana M, Elboim M, Gazit R, Gur C, Nagler A, Mandelboim O. NK cell receptor NKp46 regulates graft-versus-host disease. Cell Rep.  Jun 2014 pubmed

Elinav H, Hershko-Klement A, Valinsky L, Jaffe J, Wiseman A, Shimon H, Braun E, Paitan Y, Block C, Sorek R, Nir-Paz R; Israeli Listeria Study Group. Pregnancy-associated listeriosis: clinical characteristics and geospatial analysis of a 10-year period in Israel. Clin Infect Dis.  Jun 2014 pubmed

Liu P, Kaplan A, Yuan B, Hanna JH, Lupski JR, Reiner O. Passage Number is a Major Contributor to Genomic Structural Variations in Mouse iPSCs. Stem Cells.  Jun 2014 pubmed

Nitzan M, Steiman-Shimony A, Altuvia Y, Biham O, Margalit H. Interactions between distant ceRNAs in regulatory networks. Biophys J.  May 2014 pubmed

Bazak L, Levanon EY, Eisenberg E. Genome-wide analysis of Alu editability. Nucleic Acids Res. 2014 May 14. PubMed PMID: 24829451

Ludwig G, Nejman D, Hecht M, Orlanski S, Abu-Remaileh M, Yanuka O, Sandler O, Marx A, Roberts D, Benvenisty N, Bergman Y, Mendelsohn M, Cedar H. Aberrant DNA methylation in ES cells. PLoS One.  May 2014 pubmed

Kraus M, Lev A, Simon AJ, Levran I, Nissenkorn A, Levi YB, Berkun Y, Efrati O, Amariglio N, Rechavi G, Somech R. Disturbed B and T cell homeostasis and neogenesis in patients with ataxia telangiectasia. J Clin Immunol. 2014 May 1. PubMed PMID: 24789685

Bar DZ, Davidovich M, Lamm AT, Zer H, Wilson KL, Gruenbaum Y. BAF-1 mobility is regulated by environmental stresses. Mol Biol Cell. 2014 Apr PubMed PMID: 24501420

Wald N, Margalit H. Auxiliary tRNAs: large-scale analysis of tRNA genes reveals patterns of tRNA repertoire dynamics. Nucleic Acids Res. 2014 Apr 29. PubMed PMID: 24782525

Weiss R, Bartok O, Mezan S, Malka Y, Kadener S. Synergistic interactions between the molecular and neuronal circadian networks drive robust behavioral circadian rhythms in Drosophila melanogaster. PLoS Genet. 2014 Apr PubMed PMID: 24698952

Gaisler-Salomon I, Kravitz E, Feiler Y, Safran M, Biegon A, Amariglio N, Rechavi G. Hippocampus-specific deficiency in RNA editing of GluA2 in Alzheimer's disease. Neurobiol Aging. 2014 Aug PubMed PMID: 24679603

Tsukerman P, Stern-Ginossar N, Yamin R, Ophir Y, Stanietsky AM, Mandelboim O. Expansion of CD16 positive and negative human NK cells in response to tumor stimulation. Eur J Immunol. 2014 May PubMed PMID: 24469995

Fu Y, Dominissini D, Rechavi G, He C. Gene expression regulation mediated through reversible m(6)A RNA methylation. Nat Rev Genet. 2014 May PubMed PMID: 24662220

Tsukerman P, Stern-Ginossar N, Yamin R, Ophir Y, Stanietsky AM, Mandelboim O. Expansion of CD16 positive and negative human NK cells in response to tumor stimulation. Eur J Immunol. 2014 May PubMed PMID: 24469995

Zhou H, Wan B, Grubisic I, Kaplan T, Tjian R. TAF7L modulates brown adipose tissue formation. Elife.  May 2014 pubmed

Peer A, Margalit H. Evolutionary patterns of Escherichia coli small RNAs and their regulatory interactions. RNA.  May 2014 pubmed

Chapnik E, Rivkin N, Mildner A, Beck G, Pasvolsky R, Metzl-Raz E, Birger Y, Amir G, Tirosh I, Porat Z, Israel LL, Lellouche E, Michaeli S, Lellouche JP, Izraeli S, Jung S, Hornstein E. miR-142 orchestrates a network of actin cytoskeleton regulators during megakaryopoiesis. Elife.  May 2014 pubmed

Pandey D, Sikka G, Bergman Y, Kim JH, Ryoo S, Romer L, Berkowitz D. Transcriptional Regulation of Endothelial Arginase 2 by Histone Deacetylase 2. Arterioscler Thromb Vasc Biol. 2014 May 15. PubMed PMID: 24833798

January - March

Pinto Y, Cohen HY, Levanon EY. Mammalian conserved ADAR targets comprise only a small fragment of the human editosome. Genome Biol. 2014 Jan 7 PubMed PMID: 24393560

Popowski M, Templeton TD, Lee BK, Rhee C, Li H, Miner C, Dekker JD, Orlanski S, Bergman Y, Iyer VR, Webb CF, Tucker H. Bright/Arid3A Acts as a Barrier to Somatic Cell Reprogramming through Direct Regulation of Oct4, Sox2, and Nanog. Stem Cell Reports. 2014 Jan 14 PubMed PMID: 24511468

Enk J, Mandelboim O. The Role of Natural Cytotoxicity Receptors in Various Pathologies: Emphasis on Type I Diabetes. Front Immunol. 2014 Jan PubMed PMID: 24478773

Bazak L, Haviv A, Barak M, Jacob-Hirsch J, Deng P, Zhang R, Isaacs FJ, Rechavi G, Li JB, Eisenberg E, Levanon EY. A-to-I RNA editing occurs at over a hundred million genomic sites, located in a majority of human genes. Genome Res. 2014 Mar PubMed PMID: 24347612

Ben-Shoshan SO, Simon AJ, Jacob-Hirsch J, Shaklai S, Paz-Yaacov N, Amariglio N, Rechavi G, Trakhtenbrot L. Induction of polyploidy by nuclear fusion mechanism upon decreased expression of the nuclear envelope protein LAP2β in the human osteosarcoma cell line U2OS. Mol Cytogenet. 2014 Jan 28 PubMed PMID: 24472424

Nechooshtan G, Elgrably-Weiss M, Altuvia S. Changes in transcriptional pausing modify the folding dynamics of the pH-responsive RNA element. Nucleic Acids Res. 2014 Jan PubMed PMID: 24078087

Nitzan M, Wassarman KM, Biham O, Margalit H. Global regulation of transcription by a small RNA: a quantitative view. Biophys J. 2014 Mar 4 PubMed PMID: 24606944

Almendro V, Cheng YK, Randles A, Itzkovitz S, Marusyk A, Ametller E, Gonzalez-Farre X, Muñoz M, Russnes HG, Helland A, Rye IH, Borresen-Dale AL, Maruyama R, van Oudenaarden A, Dowsett M, Jones RL, Reis-Filho J, Gascon P, Gönen M, Michor F, Polyak K. Inference of tumor evolution during chemotherapy by computational modeling and in situ analysis of genetic and phenotypic cellular diversity. Cell Rep. 2014 Feb 13 PubMed PMID: 24462293

Nachmani D, Zimmermann A, Oiknine Djian E, Weisblum Y, Livneh Y, Khanh Le VT, Galun E, Horejsi V, Isakov O, Shomron N, Wolf DG, Hengel H, Mandelboim O. MicroRNA editing facilitates immune elimination of HCMV infected cells. PLoS Pathog. 2014 Feb PubMed PMID: 24586166

Elias S, Yamin R, Golomb L, Tsukerman P, Stanietsky-Kaynan N, Ben-Yehuda D, Mandelboim O. Immune evasion by oncogenic proteins of acute myeloid leukemia. Blood. 2014 Mar 6 PubMed PMID: 24449212

Bar-On Y, Seidel E, Tsukerman P, Mandelboim M, Mandelboim O. Influenza Virus Uses Its Neuraminidase Protein to Evade the Recognition of Two Activating NK Cell Receptors. J Infect Dis. 2014 Mar 25. [Epub ahead of print] PubMed PMID: 24532603

Almendro V, Kim HJ, Cheng YK, Gönen M, Itzkovitz S, Argani P, van Oudenaarden A, Sukumar S, Michor F, Polyak K. Genetic and phenotypic diversity in breast tumor metastases. Cancer Res. 2014 Mar 1 PubMed PMID: 24448237

Germanguz I, Shtrichman R, Osenberg S, Ziskind A, Novak A, Domev H, Laevsky I, Jacob-Hirsch J, Feiler Y, Rechavi G, Itskovitz-Eldor J. ADAR1 is involved in the regulation of reprogramming human fibroblasts to induced pluripotent stem cells. Stem Cells Dev. 2014 Mar 1 PubMed PMID: 24192045

Jaitin DA, Kenigsberg E, Keren-Shaul H, Elefant N, Paul F, Zaretsky I, Mildner A, Cohen N, Jung S, Tanay A, Amit I. Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types. Science. 2014 Feb 14 PubMed PMID: 24531970

Winkelmann A, Maggio N, Eller J, Caliskan G, Semtner M, Haussler U, Junttner R, Dugladze T, Smolinsky B, Kowalczyk S, Chronowska E, Schwarz G, Rathjen FG, Rechavi G, Haas CA, Kulik A, Gloveli T, Heinemann U, Meier JC. Changes in neural network homeostasis trigger neuropsychiatric symptoms. J Clin Invest. 2014 Feb 3 PubMed PMID: 24430185

Porcel BM, Denoeud F, Opperdoes F, Noel B, Madoui MA, Hammarton TC, Field MC, Da Silva C, Couloux A, Poulain J, Katinka M, Jabbari K, Aury JM, Campbell DA, Cintron R, Dickens NJ, Docampo R, Sturm NR, Koumandou VL, Fabre S, Flegontov P, Lukeš J, Michaeli S, Mottram JC, Szöőr B, Zilberstein D, Bringaud F, Wincker P, Dollet M. The streamlined genome of Phytomonas spp. relative to human pathogenic kinetoplastids reveals a parasite tailored for plants. PLoS Genet. 2014 Feb PubMed PMID: 24516393

2013

October - December

Eisenberg E, Levanon EY. Human housekeeping genes, revisited. Trends Genet. 2013 Oct PubMed PMID: 23810203

Buchman YK, Lellouche E, Zigdon S, Bechor M, Michaeli S, Lellouche JP. Silica nanoparticles and polyethyleneimine (PEI)-mediated functionalization: a new method of PEI covalent attachment for siRNA delivery applications. Bioconjug Chem. 2013 Dec 18 PubMed PMID: 24180511

Rais Y, Zviran A, Geula S, Gafni O, Chomsky E, Viukov S, Mansour AA, Caspi I, Krupalnik V, Zerbib M, Maza I, Mor N, Baran D, Weinberger L, Jaitin DA, Lara-Astiaso D, Blecher-Gonen R, Shipony Z, Mukamel Z, Hagai T, Gilad S, Amann-Zalcenstein D, Tanay A, Amit I, Novershtern N, Hanna JH. Deterministic direct reprogramming of somatic cells to pluripotency. Nature. 2013 Oct 3 PubMed PMID: 24048479

Vandooren J, Berghmans N, Dillen C, Van Aelst I, Ronsse I, Israel LL, Rosenberger I, Kreuter J, Lellouche JP, Michaeli S, Locatelli E, Franchini MC, Aiertza MK, S√°nchez-Abella L, Loinaz I, Edwards DR, Shenkman L, Opdenakker G. Intradermal air pouch leukocytosis as an in vivo test for nanoparticles. Int J Nanomedicine. 2013 Dec PubMed PMID: 24379662

Gafni O, Weinberger L, Mansour AA, Manor YS, Chomsky E, Ben-Yosef D, Kalma Y, Viukov S, Maza I, Zviran A, Rais Y, Shipony Z, Mukamel Z, Krupalnik V, Zerbib M, Geula S, Caspi I, Schneir D, Shwartz T, Gilad S, Amann-Zalcenstein D, Benjamin S, Amit I, Tanay A, Massarwa R, Novershtern N, Hanna JH. Derivation of novel human ground state naive pluripotent stem cells. Nature. 2013 Dec 12 PubMed PMID: 24172903

Mezan S, Ashwal-Fluss R, Shenhav R, Garber M, Kadener S. Genome-wide assessment of post-transcriptional control in the fly brain. Front Mol Neurosci. 2013 Dec PubMed PMID: 24367289

Czerniak E, Korostishevsky M, Frisch A, Cohen Y, Amariglio N, Rechavi G, Michaelovsky E, Stein D, Danziger Y, Fennig S, Apter A, Weizman A, Gak E. Association between a common CYP17A1 haplotype and anxiety in female anorexia nervosa. Arch Womens Ment Health. 2013 Oct PubMed PMID: http://www.ncbi.nlm.nih.gov/pubmed/23775394

Feldstein O, Nizri T, Doniger T, Jacob J, Rechavi G, Ginsberg D. The long non-coding RNA ERIC is regulated by E2F and modulates the cellular response to DNA damage. Mol Cancer. 2013 Oct 29 PubMed PMID: 24168400

Zhou H, Grubisic I, Zheng K, He Y, Wang PJ, Kaplan T, Tjian R. Taf7l cooperates with Trf2 to regulate spermiogenesis. Proc Natl Acad Sci U S A. 2013 Oct 15 PubMed PMID: 24082143

 Lindiƒç N, Budiƒç M, Petan T, Knisbacher BA, Levanon EY, Lov≈°in N. Differential inhibition of LINE1 and LINE2 retrotransposition by vertebrate AID/APOBEC proteins. Retrovirology. 2013 Dec 17 PubMed PMID: 24344916

 Gur C, Coppenhagen-Glazer S, Rosenberg S, Yamin R, Enk J, Glasner A, Bar-On Y, Fleissig O, Naor R, Abed J, Mevorach D, Granot Z, Bachrach G, Mandelboim O. Natural killer cell-mediated host defense against uropathogenic E. coli is counteracted by bacterial hemolysinA-dependent killing of NK cells. Cell Host Microbe. 2013 Dec 11 PubMed PMID: 24331464

Ghadially H, Horani A, Glasner A, Elboim M, Gazit R, Shoseyov D, Mandelboim O. NKp46 regulates allergic responses. Eur J Immunol. 2013 Nov PubMed PMID: 23878025

Kostler WJ, Zeisel A, Korner C, Tsai JM, Jacob-Hirsch J, Ben-Chetrit N, Sharma K, Cohen-Dvashi H, Yitzhaky A, Lader E, Tschulena U, Rechavi G, Domany E, Wiemann S, Yarden Y. Epidermal growth-factor-induced transcript isoform variation drives mammary cell migration. PLoS One. 2013 Dec PubMed PMID: 24324612

Rockah-Shmuel L, Toth-Petroczy A, Sela A, Wurtzel O, Sorek R, Tawfik DS. Correlated occurrence and bypass of frame-shifting insertion-deletions (InDels) to give functional proteins. PLoS Genet. 2013 Oct PubMed PMID: 24204297

Wagner A, Zarecki R, Reshef L, Gochev C, Sorek R, Gophna U, Ruppin E. Computational evaluation of cellular metabolic costs successfully predicts genes whose expression is deleterious. Proc Natl Acad Sci U S A. 2013 Nov 19 PubMed PMID: 24198337

Nagano T, Lubling Y, Stevens TJ, Schoenfelder S, Yaffe E, Dean W, Laue ED, Tanay A, Fraser P. Single-cell Hi-C reveals cell-to-cell variability in chromosome structure. Nature. 2013 Oct 3 PubMed PMID: 24067610

 Sofueva S, Yaffe E, Chan WC, Georgopoulou D, Vietri Rudan M, Mira-Bontenbal H, Pollard SM, Schroth GP, Tanay A, Hadjur S. Cohesin-mediated interactions organize chromosomal domain architecture. EMBO J. 2013 Dec 11 PubMed PMID: 24185899

April - June

Lubezky N, Loewenstein S, Ben-Haim M, Brazowski E, Marmor S, Pasmanik-Chor M, Oron-Karni V, Rechavi G, Klausner JM, Lahat G. MicroRNA expression signatures in intraductal papillary mucinous neoplasm of the pancreas. Surgery. 2013 May PubMed PMID: 23305591

Solomon O, Oren S, Safran M, Deshet-Unger N, Akiva P, Jacob-Hirsch J, Cesarkas K, Kabesa R, Amariglio N, Unger R, Rechavi G, Eyal E. Global regulation of alternative splicing by adenosine deaminase acting on RNA (ADAR). RNA. 2013 May PubMed PMID: 23474544

Karunker I, Rotem O, Dori-Bachash M, Jurkevitch E, Sorek R. A global transcriptional switch between the attack and growth forms of Bdellovibrio bacteriovorus. PLoS One. 2013 Apr 16 PubMed PMID: 23613952

Kenigsberg E, Tanay A. Drosophila functional elements are embedded in structurally constrained sequences. PLoS Genet. 2013 May PubMed PMID: 23750124

Amshalom A, Lev A, Trakhtenbrot L, Golan H, Weiss B, Amariglio N, Rechavi G, Somech R. Severe eosinophilia in children: a diagnostic dilemma. J Pediatr Hematol Oncol. 2013 May PubMed PMID: http://www.ncbi.nlm.nih.gov/pubmed/23612381

Mick E, Stern A, Sorek R. Holding a grudge: persisting anti-phage CRISPR immunity in multiple human gut microbiomes. RNA Biol. 2013 May PubMed PMID: 23439321

Melamed Z, Levy A, Ashwal-Fluss R, Lev-Maor G, Mekahel K, Atias N, Gilad S, Sharan R, Levy C, Kadener S, Ast G. Alternative splicing regulates biogenesis of miRNAs located across exon-intron junctions. Mol Cell. 2013 Jun 27 PubMed PMID: 23747012

Bar-On Y, Glasner A, Meningher T, Achdout H, Gur C, Lankry D, Vitenshtein A, Meyers AF, Mandelboim M, Mandelboim O. Neuraminidase-mediated, NKp46-dependent immune-evasion mechanism of influenza viruses. Cell Rep. 2013 Apr 25 PubMed PMID: 23602571

Tanay A, Cavalli G. Chromosomal domains: epigenetic contexts and functional implications of genomic compartmentalization. Curr Opin Genet Dev. 2013 Apr PubMed PMID: 23414654

Koch J, Steinle A, Watzl C, Mandelboim O. Activating natural cytotoxicity receptors of natural killer cells in cancer and infection. Trends Immunol. 2013 Apr PubMed PMID: 23414611

Nemlich Y, Greenberg E, Ortenberg R, Besser MJ, Barshack I, Jacob-Hirsch J, Jacoby E, Eyal E, Rivkin L, Prieto VG, Chakravarti N, Duncan LM, Kallenberg DM, Galun E, Bennett DC, Amariglio N, Bar-Eli M, Schachter J, Rechavi G, Markel G. MicroRNA-mediated loss of ADAR1 in metastatic melanoma promotes tumor growth. J Clin Invest. 2013 Jun 3 PubMed PMID: 23728176

Gupta SK, Kolet L, Doniger T, Biswas VK, Unger R, Tzfati Y, Michaeli S. The Trypanosoma brucei telomerase RNA (TER) homologue binds core proteins of the C/D snoRNA family. FEBS Lett. 2013 May 2 PubMed PMID: 23523918

Pencovich N, Jaschek R, Dicken J, Amit A, Lotem J, Tanay A, Groner Y. Cell-autonomous function of Runx1 transcriptionally regulates mouse megakaryocytic maturation. PLoS One. 2013 May 23 PubMed PMID: 23717578

Edelheit S, Schwartz S, Mumbach MR, Wurtzel O, Sorek R. Transcriptome-wide mapping of 5-methylcytidine RNA modifications in bacteria, archaea, and yeast reveals m5C within archaeal mRNAs. PLoS Genet. 2013 Jun PubMed PMID: http://www.ncbi.nlm.nih.gov/pubmed/23825970

 Sberro H, Leavitt A, Kiro R, Koh E, Peleg Y, Qimron U, Sorek R. Discovery of functional toxin/antitoxin systems in bacteria by shotgun cloning. Mol Cell. 2013 Apr 11 PubMed PMID: 23478446

Mansour AA, Hanna JH. Oct4 shuffles Sox partners to direct cell fate. EMBO J. 2013 Apr 3 PubMed PMID: 23474893

Sberro H, Leavitt A, Kiro R, Koh E, Peleg Y, Qimron U, Sorek R. Discovery of functional toxin/antitoxin systems in bacteria by shotgun cloning. Mol Cell. 2013 Apr 11 PubMed PMID:

July - September

Gupta SK, Kosti I, Plaut G, Pivko A, Tkacz ID, Cohen-Chalamish S, Biswas DK, Wachtel C, Waldman Ben-Asher H, Carmi S, Glaser F, Mandel-Gutfreund Y, Michaeli S. The hnRNP F/H homologue of Trypanosoma brucei is differentially expressed in the two life cycle stages of the parasite and regulates splicing and mRNA stability. Nucleic Acids Res. 2013 Jul PubMed PMID: 23666624

Mukamel Z, Tanay A. Hypomethylation marks enhancers within transposable elements. Nat Genet. 2013 Jul PubMed PMID: 23800863

Lankry D, Rovis TL, Jonjic S, Mandelboim O. The interaction between CD300a and phosphatidylserine inhibits tumor cell killing by NK cells. Eur J Immunol. 2013 Aug PubMed PMID: 23640773

Quax TE, Wolf YI, Koehorst JJ, Wurtzel O, van der Oost R, Ran W, Blombach F, Makarova KS, Brouns SJ, Forster AC, Wagner EG, Sorek R, Koonin EV, van der Oost J. Differential translation tunes uneven production of operon-encoded proteins. Cell Rep. 2013 Sep 12 PubMed PMID: 24012761

Gur C, Enk J, Weitman E, Bachar E, Suissa Y, Cohen G, Schyr RB, Sabanay H, Horwitz E, Glaser B, Dor Y, Pribluda A, Hanna JH, Leibowitz G, Mandelboim O. The expression of the beta cell-derived autoimmune ligand for the killer receptor nkp46 is attenuated in type 2 diabetes. PLoS One. 2013 Aug PubMed PMID: 24009765

Maggio N, Itsekson Z, Dominissini D, Blatt I, Amariglio N, Rechavi G, Tanne D, Chapman J. Thrombin regulation of synaptic plasticity: implications for physiology and pathology. Exp Neurol. 2013 Sep PubMed PMID: 23454608

Yamin R, Kaynan NS, Glasner A, Vitenshtein A, Tsukerman P, Bauman Y, Ophir Y, Elias S, Bar-On Y, Gur C, Mandelboim O. The viral KSHV chemokine vMIP-II inhibits the migration of Naive and activated human NK cells by antagonizing two distinct chemokine receptors. PLoS Pathog. 2013 Aug PubMed PMID: 23966863

Somech R, Lev A, Simon AJ, Korn D, Garty BZ, Amariglio N, Rechavi G, Almashanu S, Zlotogora J, Etzioni A. Newborn screening for severe T and B cell immunodeficiency in Israel: a pilot study. Isr Med Assoc J. 2013 Aug PubMed PMID: 24079059

Lyubimova A, Itzkovitz S, Junker JP, Fan ZP, Wu X, van Oudenaarden A. Single-molecule mRNA detection and counting in mammalian tissue. Nat Protoc. 2013 Sep PubMed PMID: 23949380

Vilboux T, Lev A, Malicdan MC, Simon AJ, Järvinen P, Racek T, Puchalka J, Sood R, Carrington B, Bishop K, Mullikin J, Huizing M, Garty BZ, Eyal E, Wolach B, Gavrieli R, Toren A, Soudack M, Atawneh OM, Babushkin T, Schiby G, Cullinane A, Avivi C, Polak-Charcon S, Barshack I, Amariglio N, Rechavi G, van der Werff ten Bosch J, Anikster Y, Klein C, Gahl WA, Somech R A congenital neutrophil defect syndrome associated with mutations in VPS45. N Engl J Med. 2013 Jul 4 PubMed PMID: 23738510

Farhy C, Elgart M, Shapira Z, Oron-Karni V, Yaron O, Menuchin Y, Rechavi G, Ashery-Padan R. Pax6 is required for normal cell-cycle exit and the differentiation kinetics of retinal progenitor cells. PLoS One. 2013 Sep PubMed PMID: 24073291

Lioliou E, Sharma CM, Altuvia Y, Caldelari I, Romilly C, Helfer AC, Margalit H, Romby P. In vivo mapping of RNA-RNA interactions in Staphylococcus aureus using the endoribonuclease III. Methods. 2013 Sep 15 PubMed PMID: 23851283

Birger Y, Goldberg L, Chlon TM, Goldenson B, Muler I, Schiby G, Jacob-Hirsch J, Rechavi G, Crispino JD, Izraeli S. Perturbation of fetal hematopoiesis in a mouse model of Down syndrome's transient myeloproliferative disorder. Blood. 2013 Aug 8 PubMed PMID: 23719302

Paris M, Kaplan T, Li XY, Villalta JE, Lott SE, Eisen MB. Extensive divergence of transcription factor binding in Drosophila embryos with highly conserved gene expression. PLoS Genet. 2013 Sep PubMed PMID: 24068946

Haas BJ, Papanicolaou A, Yassour M, Grabherr M, Blood PD, Bowden J, Couger MB, Eccles D, Li B, Lieber M, Macmanes MD, Ott M, Orvis J, Pochet N, Strozzi F, Weeks N, Westerman R, William T, Dewey CN, Henschel R, Leduc RD, Friedman N, et al. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nat Protoc. 2013 Aug PubMed PMID: 23845962

Hosomi S, Chen Z, Baker K, Chen L, Huang YH, Olszak T, Zeissig S, Wang JH, Mandelboim O, Beauchemin N, Lanier LL, Blumberg RS. CEACAM1 on activated NK cells inhibits NKG2D-mediated cytolytic function and signaling. Eur J Immunol. 2013 Sep PubMed PMID: 23696226

Bartok O, Kyriacou CP, Levine J, Sehgal A, Kadener S. Adaptation of molecular circadian clockwork to environmental changes: a role for alternative splicing and miRNAs. Proc Biol Sci. 2013 Jul 3 PubMed PMID: 23825200

Stanietsky N, Rovis TL, Glasner A, Seidel E, Tsukerman P, Yamin R, Enk J, Jonjic S, Mandelboim O. Mouse TIGIT inhibits NK-cell cytotoxicity upon interaction with PVR. Eur J Immunol. 2013 Aug PubMed PMID: 23677581

Ben-Ami O, Friedman D, Leshkowitz D, Goldenberg D, Orlovsky K, Pencovich N, Lotem J, Tanay A, Groner Y. Addiction of t(8;21) and inv(16) acute myeloid leukemia to native RUNX1. Cell Rep. 2013 Sep 26 PubMed PMID: 24055056

January - March

Dominissini D, Moshitch-Moshkovitz S, Salmon-Divon M, Amariglio N, Rechavi G. Transcriptome-wide mapping of N(6)-methyladenosine by m(6)A-seq based on immunocapturing and massively parallel sequencing. Nat Protoc. 2013 Jan PubMed PMID: 23288318

Bergman Y, Cedar H. DNA methylation dynamics in health and disease. Nat Struct Mol Biol. 2013 Mar PubMed PMID: 23463312

Gupta SK, Carmi S, Waldman Ben-Asher H, Tkacz ID, Naboishchikov I, Michaeli S. Basal splicing factors regulate the stability of mature mRNAs in trypanosomes. J Biol Chem. 2013 Feb 15 PubMed PMID: 23283975

Sesto N, Wurtzel O, Archambaud C, Sorek R, Cossart P. The excludon: a new concept in bacterial antisense RNA-mediated gene regulation. Nat Rev Microbiol. 2013 Feb PubMed PMID: 23268228

Bienko M, Crosetto N, Teytelman L, Klemm S, Itzkovitz S, van Oudenaarden A. A versatile genome-scale PCR-based pipeline for high-definition DNA FISH. Nat Methods. 2013 Feb PubMed PMID: 23263692

Eyal E, Tohami T, Amir A, Cesarkas K, Jacob-Hirsch J, Volchek Y, Nagler A, Rechavi G, Amariglio N. Detection of BCR-ABL1 mutations in chronic myeloid leukaemia by massive parallel sequencing. Br J Haematol. 2013 Feb PubMed PMID: 23252482

Elboim M, Grodzovski I, Djian E, Wolf DG, Mandelboim O. HSV-2 specifically down regulates HLA-C expression to render HSV-2-infected DCs susceptible to NK cell killing. PLoS Pathog. 2013 Mar PubMed PMID: 23555244

Lev A, Simon AJ, Broides A, Levi J, Garty BZ, Rosenthal E, Amariglio N, Rechavi G, Somech R. Thymic function in MHC class II-deficient patients. J Allergy Clin Immunol. 2013 Mar PubMed PMID: 23228244

Friedman N. Studying gene expression at the level of the single cell. Brief Funct Genomics. 2013 Mar PubMed PMID: 23536214

Visel A, Taher L, Girgis H, May D, Golonzhka O, Hoch RV, McKinsey GL, Pattabiraman K, Silberberg SN, Blow MJ, Hansen DV, Nord AS, Akiyama JA, Holt A, Hosseini R, Phouanenavong S, Plajzer-Frick I, Shoukry M, Afzal V, Kaplan T, Kriegstein AR, Rubin EM, et al. A high-resolution enhancer atlas of the developing telencephalon. Cell. 2013 Feb 14 PubMed PMID: 23375746

Corrales-Aguilar E, Trilling M, Reinhard H, Mercé-Maldonado E, Widera M, Schaal H, Zimmermann A, Mandelboim O, Hengel H. A novel assay for detecting virus-specific antibodies triggering activation of Fcγ receptors. J Immunol Methods. 2013 Jan 31 PubMed PMID: 23023090

Friedman N. Comprehensive mapping of DNA damage: from static genetic maps to condition-specific maps. Mol Cell. 2013 Jan 24 PubMed PMID: 23352245

Tsukerman P, Enk J, Mandelboim O. Metastamir-mediated immune evasion: miR-10b downregulates the stress-induced molecule MICB, hence avoid recognition by NKG2D receptor. Oncoimmunology. 2013 Jan 1 PubMed PMID: 23479551

Tallerico R, Todaro M, Di Franco S, Maccalli C, Garofalo C, Sottile R, Palmieri C, Tirinato L, Pangigadde PN, La Rocca R, Mandelboim O, Stassi G, Di Fabrizio E, Parmiani G, Moretta A, Dieli F, Kärre K, Carbone E. Human NK cells selective targeting of colon cancer-initiating cells: a role for natural cytotoxicity receptors and MHC class I molecules. J Immunol. 2013 Mar 1 PubMed PMID: 23345327

Pandey V, Turm H, Bekenstein U, Shifman S, Kadener S. A new in vivo model of pantothenate kinase-associated neurodegeneration reveals a surprising role for transcriptional regulation in pathogenesis. Front Cell Neurosci. 2013 PubMed PMID: 24058333

Zhou H, Kaplan T, Li Y, Grubisic I, Zhang Z, Wang PJ, Eisen MB, Tjian R. Dual functions of TAF7L in adipocyte differentiation. Elife. 2013 Jan 8 PubMed PMID: 23326641